Monday, September 21, 2015

Growing biocrust and putting it into the field!

I'm excited to share with you some photos of the amazing biocrust grown by the Bowker lab over the summer!


Here are some photos of the absolutely beautiful crust grown at the NAU greenhouse from inoculum collected in Bandelier National Monument.  We grew the crust for five months giving it plenty of water and comfortable growing conditions.  In July we harvested the grown crust and distributed the "bulked" (greenhouse grown) inoculum into experimental field plots in Bandelier National Monument.  In the below picture, you can see where biocrust has been scraped from the soil surface and collected to use for field inoculum.

The idea behind the project that Matt, myself, and our USGS colleagues developed is to see if the addition of biocrust, in combination with other restoration techniques, can help stabilize the actively eroding soils of Bandelier National Monument.  


Pictures like the one above show the incredible ability of cyanboacterial filaments to hold onto soil particles and thereby aggregate the soil surface together.   In the picture below you see the underside of a large chunk of biocrust.  We gently scraped off soil particles clinging to the underside of the crust, and exposed all the cyanobacterial filaments.  Pretty cool! 
We are interested to see if biocrust's ability to aggregate the soil surface, provide soil nutrients, and increase soil water retention may help to get Bandelier out of its cycle of erosion. In October we will go back to Bandelier to see if the field inoculum has grown.  Stay tuned for an update on the progress in late fall!


Wednesday, September 16, 2015

MEGA Science on Tap Event, Sept. 17 2015, Green Room, Flagstaff


Come hear about our research at Science on Tap, tommorrow might at 5:30. Science and beer together at last!

Thursday, August 6, 2015

Lab members to present at the Ecological Society of America Meeting in Baltimore

OOS 6-9
Pairing Bouteloua gracilis with its "home-team" soil organisms enhances plant growth regardless of environmental conditions
Monday, August 10, 2015: 4:20 PM
327, Baltimore Convention Center


Michael Remke, Forestry, Northern Arizona University, Flagstaff, AZ, USA
Matthew A. Bowker, School of Forestry, Northern Arizona University, Flagstaff, AZ, USA
Nancy C. Johnson, Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA

Background/Question/Methods

On the Colorado Plateau, land use changes and prolonged drought are negatively impacting native plants. Bouteloua gracilis is a native perennial grass on the Colorado Plateau that is obligate to soil organisms, such as mycorrhizal fungi. Plants and soil organisms may be locally adapted to one another suggesting that benefits from soil organisms are site specific. Some evidence exists that soil organisms from a dry environment are more efficient in mitigating plant responses to drought stress. It is unclear whether soil organisms and plants are co-adapted, or if soil organisms from novel environments facilitate plant adaptations to novel environments.  In this experiment, we conducted a greenhouse study to examine whether novel soil organisms would provide equal benefits to B. gracilis populations as natal soil organisms.  We also examined the lasting effects of exotic plant invasion on soil organism communities, and how these altered soil communities affect native grass growth. We used soil inocula and B. gracilis individuals from two different sites to determine the benefits received from novel versus natal soil organisms. We used live soil inoculum from an area invaded by Bromus tectorum to examine how altered soil organism communities alter plant growth.

Results/Conclusions

We found that plants grown in association with soil organisms from their natal site were the tallest and grew fastest (p=0.0184). We also found that plants grown in association with B. tectorum invaded soil had the lowest establishment rates and were the shortest (p=0.0022). In addition, plant roots were more colonized by arbuscular mycorrhizal fungi when paired with their home team soil organisms. These data suggests the symbiosis that occurs between B. gracilis and its soil organisms likely co-evolved and is site specific. Land managers should then be interested in preparing soil inoculum from seed collection sites to enhance performance of restoration projects in disturbed or invaded sites. In addition, B. tectorum appears to manipulate soil organism communities in a way that inhibits establishment of B. gracilis. This could be due to a reduction of mycorrhizal densities, or due to an accumulation of parasitic organisms. This negative plant-soil feedback has major implications for land managers interested in restoring landscapes invaded by B. tectorum. Matching plant populations with their natal, un-invaded soil organism communities could be the missing link in restoration following exotic species invasion.

COS 60-4
Biological soil crusts and global change: Spectrally monitoring moss responses to future climate change scenarios
Wednesday, August 12, 2015: 9:00 AM
318, Baltimore Convention Center


Kristina E. Young, School of Forestry, Northern Arizona University, Flagstaff, AZ, USA
Sasha C. Reed, Southwest Biological Science Center, U.S. Geological Survey, Moab, UT, USA

Background/Question/Methods

Dryland biological soil crusts - a community of mosses, lichens, cyanobacteria, and heterotrophs living at the soil surface - are a fundamental component of the structure and function of arid and semiarid ecosystems.  These soil communities play critical roles in dryand carbon fixation, nitrogen fixation, and soil stabilization, and existing data suggest biocrusts are sensitive to seemingly subtle changes in climate. For example, previous research on the Colorado Plateau showed dramatic mortality of the common moss Syntrichia caninervis in response to an increase in the frequency of small monsoonal rainfall events.  Yet, despite the importance of these biocrust organisms, our ability to monitor biocrust responses to altered climate remains limited.  Spectral imaging represents an under-exploited tool for documenting change within biological soil crust communities. Here, we induced stress within Syntrichia caninervis samples by increasing the frequency (twice weekly) of small (1.2mm) rainfall events, and used spectral analyses to monitor the moss’s progression towards eventual mortality.  We focused on a number of indices as potential tools for assessing change, including the Normalized Difference Vegetative Index (NDVI).  In addition, we concurrently examined shifts in nitrogen cycling within the soil matrix of stressed mosses to link moss stress, spectral imaging, and biogeochemical consequences.

Results/Conclusions

As expected, mosses were strongly, negatively affected by the increased frequency of small rainfall events, and exhibited clear signs of chlorisis - a yellowing and reddening of moss leaves.  Belowground changes to biogeochemical cycling occurred in the form of decreasing NH4+ concentrations, and concurrently increasing NO3- concentrations, alluding to a steady progression towards NO3- dominance in the soil. These changes to soil N cycling occurred before significant moss stress became visibly apparent, implying that even early stress to moss has large implications for soil fertility.  We found spectral analyses an effective tool for quantify the progression towards chlorosis within this moss species, however, the NDVI wide band index that is widely used for remote sensing of vascular plants was an unexpectedly poor indicator of stress. Instead, narrow band hyperspectral indices were much more effective at quantifying chlorosis.  These findings suggest that the correctly employed hyperspectral images could be a valuable tool for documenting change within biological soil crust communities.  Tools such as these, which can document stress, will become increasingly important to dryland ecosystem assessment in light of the dramatic biogeochemical changes associated with moss mortality.

Thursday, July 30, 2015

International Conference on Mycorrhizae in FLAGSTAFF, NEXT WEEK!



It's next week, August 3 - 7. This is the 8th edition of the conference, and of all places in the world its right here in good 'ole Flagstaff thanks to Nancy Johnson and Kitty Gehring. Also big thanks to School of Forestry Director Jim Allen for supporting student attendance. In all, hundreds of researchers from 55 nations will be attending!

Read about it here:
http://nau.edu/merriam-powell/icom8/
http://www.flagstaffbusinessnews.com/nau-hosting-international-mycorrhiza-conference/

You can speak to lab members at the School of Forestry table.

Also please check out these talks and posters by lab members:
LT 3-12
MycoDB: a global database for mycorrhizal meta-analyses

CHAUDHARY, V.B., A. Antoninka, J. Bever, J. Cannon, A. Craig, J. Duchicella, A. Frame, C. Gehring, M. Ha, M. Hart, J. Hopkins, B. Ji, N.C. Johnson, W. Kaonongbua, J. Karst, R. Koide, J. Lamit, L. McCormack, J. Meadow, B. Milligan, J. Moore, T. Pendergast, B. Piculell, B. Ramsby, M. Rúa, S. Simard, S. Shrestha, J. Umbanhower, W. Viechtbauer, L. Walters, G. Wilson, P. Zee and J. Hoeksema

LT 4-10
Community patterns of arbuscular mycorrhizal fungal spores in the Serengeti

KRZNARICH, S., A. Antoninka, B.M. Stevens and N.C. Johnson

PS 4-24
The role of mycorrhizae and soil organism communities in restoring a native grass, Bouteloua gracilis,in the face of a dynamic climate and exotic species invasion

REMKE, M.J., M. Bowker and N.C. Johnson

LT 3-14
Home-field advantage. Does the geographic origin of plants, mycorrhizal fungi and soil determine plant responses to mycorrhizal symbioses?

RÚA, M.A., A. Antoninka, P.M. Antunes, V.B. Chaudhary, C. Gehring, L.J. Lamit, B.J. Piculell, J. Bever, C. Zabinski, J.F.
Meadow, M.J. Lajeunesse, B.G. Milligan, M. Gardes, J. Karst and J.D. Hoeksema

LT 1-8
Community of arbuscular mycorrhizal fungi and landscape fragmentation in a Mexican tropical rain forest

SÁNCHEZ-GALLEN, I., A. Antoninka, L.V. Hernández-Cuevas and J. Álvarez-Sánchez

Wednesday, June 24, 2015

Introducing SEGA!

Near one of our sites, Red Mountain provides dramatic visual evidence to some of the unique edaphic conditions that exists on the Colorado Plateau 


It is with great excitement that I am writing to inform you all of the successful launch of our project on the Southwest Experimental Garden Array (SEGA).

The army of blue grama ready for dispersal to field sites


Perhaps you recall a mention of a project that uses six sites across an elevation gradient with unique soils to test a variety of plant responses to changing environmental conditions and the importance of both soil and soil biota in those changes.

Well, we started by growing Bouteloua gracilis (Blue grama) from two Pinion Juniper Sites. We used soil and soil organisms from each of these sites as well as soil and soil organisms from the transplant sites. These transplant sites include a Pinion Juniper site (2 degrees Centigrade warmer), a desert grass land (three degrees centigrade warmer), and two Ponderosa Pine sites ( 2 and three degrees centigrade cooler). In summary, plants are either grown in all home soil environments (both physical soil and soil biota from the home site), home soil, but soil biota from the transplant site, soil from the transplant site and soil biota from the home site, and lastly all away (soil and soil biota from the transplant site).

The San Francisco Peaks stand through the haze of a June Wildfire above our plots at the Arboretum at Flagstaff. 


Now that these treatment combinations have been planted in the field, we will be able to test a variety of questions related to climate change, plant migration, and plant-soil interactions. For example, if a plant is to migrate to a new site as a result of climate change or human management action, is the plant hindered by growing in a novel soil environment? Can this hinderance be alleviated by the plant migrating with its natal soil biota? Perhaps the plant is actually released from native pathogens by moving to a novel soil type and experiences enhanced growth. In addition, we can test how plants may respond to a changing climate. Since we are using an elevational gradient to simulate warming, our transplant also experience drying, however, active irrigation and weather instruments allow us to add water to simply examine a warming effect. This is important because while most climate models agree on temperature trends in the Southwest, there is far less clarity on future precipitation regimes.

This project will help us understand how plants may respond to global change on the leading edge, core, and tailing edge of their distribution, and how soil may confound these predictions, thus filling several gaps in the literature. In addition to Blue grama, we are also in progress of preparing a parallel and similar experiment that focuses on Pinus ponderosa (Ponderosa Pine) that will be launched this Fall.

Katarina collects the first data set in the field with the Arboretum greenhouse and SEGA weather station in the background.


So far, we have put in thousands of man hours to sterilizing soil and preparing sites, to see plants in the ground is a very rewarded climax of the project. Data is already showing us that some soil environments are very detrimental to plant growth and both populations o Blue grama display home soil and soil biota advantage. Furthermore, home team soil biota provide an advantage for plants growing in unfavorable soil types.

This is visual assessment of some of our treatment effects, The circled plant on the left is growing in soil and soil biota from a novel site while the circled plant on the right is growing in soil and soil biota from its site of origin. One can clearly see the "home team advantage" in the much larger plant on the right. Now that these plants are in the real world we can observe if the home team advantage persists in novel climatic environments

This project has been made possible by many helping hands. We could not have done this without our fellow lab mates, past and present, the volunteers that have come out in the field with us from friends, to fellow students and even high school students from Flagstaff Highschool! Thanks to everyone!

Students from Flagstaff High School help Install the precipitation gauge at one of the SEGA sites. 

Stay tuned for more progress updates and data! These data will be presented at the Ecological Society of American Annual meeting and the Conference for Research on the Colorado Plateau! Hope to see some of you there!
Cheers,
Michael

Not far from multiple SEGA sites is the isolated portion of the North Rim of the Grand Canyon. Here, a Pinion  Pine snag reminds us of the importance of understanding plant response to drought as a storm brings early spring moisture to the Rainbow Rim

Tuesday, May 5, 2015

Undergraduate researchers being awesome

Laura Brown (mentored by Anita Antoninka) presents on microarthropod communities inhabiting biocrusts at NAU's UGRADS Symposium.

Harlan Tso (a former REU Scholar with us) presents his current work on the swimming efficiency at different water flow rates of natiev and non-native fish at NAU's UGRADS Symposium.

Danny DePinte (mentored by Matt Bowker) presents on the effects of adding biochar to soils on soil moisture and crop production. Danny is pciture here at the Hooper Undergraduate Symposium. He also presented at UGRADS.

Congratulations to our talented and bright undergraduate researchers, and to Lucas Molina who was awarded a Hooper Undergraduate Award to work with us starting next Fall.

So long to our visiting scholars from China

L to R: Matt Bowker, Yunge Zhao, Wuxian (Rose) Xu, Mingxiang Xu

As I work on the materials for my visa to visit China in August, I am reminded that this post is very much overdue. Yunge, Mingxiang, and their daughter Rose spent about 6 productive months here in Flagstaff. It was a great benefit for my students to get to know them, and for me to collaborate with them. Also, I personally will very much miss the dumplings. Goodbye and see you again soon.